CLIP Seq Tools

GitHub link
CPAN link

Summary

CLIPSeqTools is a collection of command line applications used for the analysis of CLIP-Seq (UV cross-linking and immunoprecipitation with high-throughput sequencing) data. It offers a wide range of analyses (eg. genome read coverage, motif enrichment, relative positioning of reads of two libraries, etc). The toolbox is primarily oriented for bioinformaticians but the commands are simple enough for non experts to use.